The key idea is that when you have a BibTeX database (a plain-text file with the conventional filename extension. Section 2.8 of Xie ( 2016) has explained the details. There are multiple ways to insert citations, and we recommend that you use BibTeX databases, because they work better when the output format is LaTeX/PDF. Workflow R Markdown is a format for writing reproducible, dynamic reports with R. Footnotes are put inside the square brackets after a caret ^, e.g., ^. The syntax for images is similar: just add an exclamation mark, e.g., !(path/to/image). Subscripts are commonly used in mathematics, such as logarithmic and differential equations. Hyperlinks are created using the syntax (link), e.g., (). We need to use a tilde symbol before and after the text. To include \(n\) literal backticks, use at least \(n+1\) backticks outside, e.g., you can use four backticks to preserve three backtick inside: ```` ```code``` ````, which is rendered as ```code```. To mark text as inline code, use a pair of backticks, e.g., `code`. A pair of carets ( ^) produce a superscript (e.g., Cu^2+^ renders Cu 2+). A pair of tildes ( ~) turn text to a subscript (e.g., H~3~PO~4~ renders H 3PO 4). Nearly all Markdown applications support the basic syntax outlined in the original Markdown design document. Bold text is produced using a pair of double asterisks ( **text**). Text surrounded by will be converted to a subscript (e.g., H2SO4 renders H2 SO4). Inline text will be italic if surrounded by underscores or asterisks, e.g., _text_ or *text*. Authoring Books and Technical Documents with R Markdown Yihui Xie. 19.7 Output arguments for render functions.16.5.4 Create a widget without an R package John Gruber developed the Markdown language in 2004 in a collaborative effort with Aaron Swartz, intending to enable people to write with easy-to-read and easy-to-write plain text format and.2.1.4 2017 Employer Health Benefits Survey.Note that only the referenced "foo" and "fo" will give the subscripts while the ~~ method will only work in html but not pdf. Overall, syntax like this is a subscript is appealing but I would not know how to implement that in rmarkdown directly. The reference needs to be in its own paragraph and have an empty line both above and below it Using a visual editor like the one in RStudio ( can also help as it will automatically use \ (escaped space) when using a sentence in a subscript.The reference should not have a white space following the "to be inserted stuff".The reference needs to be unique throughout the document Subscripts in PDF files also work as expected with that markdown file: pandoc -o Subscripts.pdf Subscripts.md Edit If you want the pandoc output to match the visual appearance of the output when you knit with RStudio, download the CSS file that RStudio uses here and make a reference to that file when you create your HTML file from pandoc.My code example shows how the text reference can be used. Using LaTeX animate package in RMarkdown. RMarkdown / pandoc fails to knit Pdf with latex color commands. Rotate a graphic from RADIUS markdown in pdf. The better solution is to use text from amsmath which is shown in Natalyas answer. Add wording subscript in kable column names inside R shiny. For example, the extension transforms the text directly below into the HTML shown after it. To do so, the character becomes a Markdown tag for text meant to be subscripted, and is replaced with the HTML sub tag. (ref:foo) H~2~O where foo is the reference and H~2~O the text. The text in an R Markdown document is written with the Markdown syntax. An extension to the Python Markdown project which adds the ability to subscript text. the negative indentation of the right subscript and indents the left superscript by the same value. After a bit of searching, I finally found the text reference method explained here by : bookdownguide How can I left align latex equations in R Markdown. I, too, was looking for a method that would allow for subscript and superscript in both html and pdf formats in markdown tables with kable.
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